: 9

Validating: /9/zarr.json

Using version 0.5. Using schema: /spec-rfc2/latest/schemas/image.schema
Open with:
  • Viewer logo
{
  • attributes: {
    • ome: {
      • "version": "0.5" ,
      • multiscales: [
        • {
          • axes: [ ... ] , // 4 items
          • datasets: [ ... ] , // 6 items
          • "name": "/E/8/9"
          }
        ] ,
      • omero: { ... } , // 3 items
      • _creator: { ... } // 3 items
      }
    } ,
  • "zarr_format": 3 ,
  • "node_type": "group"
}

RO-Crate metadata

No ro-crate-metadata.json found

Multiscale 0

6 Datasets checked

Path 0/zarr.json

Array Chunk Shard
Bytes 1.30 GB 2.10 MB 83.89 MB
Shape [5,31,2044,2048] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,2,2 620 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
2048
2044
31
0/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    2044,
    2048
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724382635.3944995,
      "stop": 1724382645.7508662,
      "read": 666662794,
      "written": 521276896,
      "elapsed": 10.356366634368896,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 1/zarr.json

Array Chunk Shard
Bytes 324.42 MB 2.10 MB 83.89 MB
Shape [5,31,1022,1024] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
1024
1022
31
1/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    1022,
    1024
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724382646.2336166,
      "stop": 1724382651.4373922,
      "read": 179608254,
      "written": 140031238,
      "elapsed": 5.203775644302368,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 2/zarr.json

Array Chunk Shard
Bytes 81.11 MB 2.10 MB 83.89 MB
Shape [5,31,511,512] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
512
511
31
2/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    511,
    512
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724382651.6758962,
      "stop": 1724382654.967587,
      "read": 44768234,
      "written": 34105887,
      "elapsed": 3.2916908264160156,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 3/zarr.json

Array Chunk Shard
Bytes 20.24 MB 2.10 MB 83.89 MB
Shape [5,31,255,256] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
256
255
31
3/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    255,
    256
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724382655.2619724,
      "stop": 1724382657.821437,
      "read": 11064457,
      "written": 8616971,
      "elapsed": 2.559464454650879,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 4/zarr.json

Array Chunk Shard
Bytes 5.04 MB 2.10 MB 83.89 MB
Shape [5,31,127,128] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
128
127
31
4/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    127,
    128
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724382658.0729692,
      "stop": 1724382660.6798959,
      "read": 2833125,
      "written": 2278750,
      "elapsed": 2.606926679611206,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 5/zarr.json

Array Chunk Shard
Bytes 1.25 MB 2.10 MB 83.89 MB
Shape [5,31,63,64] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
64
63
31
5/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    63,
    64
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724382661.3632367,
      "stop": 1724382665.02369,
      "read": 738113,
      "written": 658155,
      "elapsed": 3.6604533195495605,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}