: 2

Validating: /2/zarr.json

Using version 0.5. Using schema: /spec-rfc2/latest/schemas/image.schema
Open with:
  • Viewer logo
{
  • attributes: {
    • ome: {
      • "version": "0.5" ,
      • multiscales: [
        • {
          • axes: [ ... ] , // 4 items
          • datasets: [ ... ] , // 6 items
          • "name": "/E/4/2"
          }
        ] ,
      • omero: { ... } , // 3 items
      • _creator: { ... } // 3 items
      }
    } ,
  • "zarr_format": 3 ,
  • "node_type": "group"
}

RO-Crate metadata

No ro-crate-metadata.json found

Multiscale 0

6 Datasets checked

Path 0/zarr.json

Array Chunk Shard
Bytes 1.30 GB 2.10 MB 83.89 MB
Shape [5,31,2044,2048] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,2,2 620 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
2048
2044
31
0/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    2044,
    2048
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724397494.793955,
      "stop": 1724397503.5478654,
      "read": 663087247,
      "written": 535671156,
      "elapsed": 8.753910303115845,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 1/zarr.json

Array Chunk Shard
Bytes 324.42 MB 2.10 MB 83.89 MB
Shape [5,31,1022,1024] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
1024
1022
31
1/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    1022,
    1024
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724397504.0311747,
      "stop": 1724397508.4947233,
      "read": 177452212,
      "written": 145464006,
      "elapsed": 4.46354866027832,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 2/zarr.json

Array Chunk Shard
Bytes 81.11 MB 2.10 MB 83.89 MB
Shape [5,31,511,512] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
512
511
31
2/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    511,
    512
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724397508.9917972,
      "stop": 1724397513.3003602,
      "read": 44769458,
      "written": 35849467,
      "elapsed": 4.308562994003296,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 3/zarr.json

Array Chunk Shard
Bytes 20.24 MB 2.10 MB 83.89 MB
Shape [5,31,255,256] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
256
255
31
3/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    255,
    256
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724397514.1374254,
      "stop": 1724397517.5472653,
      "read": 11355556,
      "written": 9208694,
      "elapsed": 3.4098398685455322,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 4/zarr.json

Array Chunk Shard
Bytes 5.04 MB 2.10 MB 83.89 MB
Shape [5,31,127,128] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
128
127
31
4/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    127,
    128
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724397517.7637484,
      "stop": 1724397522.8185642,
      "read": 2941271,
      "written": 2444369,
      "elapsed": 5.054815769195557,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}

Path 5/zarr.json

Array Chunk Shard
Bytes 1.25 MB 2.10 MB 83.89 MB
Shape [5,31,63,64] [1,1,1024,1024] [1,10,2048,2048]
Counts 5,31,1,1 155 Chunks 20 Shards
Type uint16 numpy.ndarray
Load chunk:
64
63
31
5/zarr.json
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        1,
        10,
        2048,
        2048
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          1024,
          1024
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    5,
    31,
    63,
    64
  ],
  "zarr_format": 3,
  "attributes": {
    "_ome2024_ngff_challenge_stats": {
      "input": "https://uk1s3.embassy.ebi.ac.uk",
      "output": "",
      "start": 1724397523.2877588,
      "stop": 1724397525.836031,
      "read": 758433,
      "written": 699234,
      "elapsed": 2.548272132873535,
      "threads": 16,
      "cpu_count": 16,
      "sched_affinity": 16
    }
  }
}