Validating: /4496763.zarr/zarr.json

Using version 0.5. Using schema: /spec-rfc2/latest/schemas/image.schema

✓

Open with:

{

attributes: {
- ome: {
  "version": "0.5" ,
  
  _creator: {
  "name": "omero-zarr"
  } ,
  
  multiscales: [
  
  {
  
  axes: [ ... ] , // 4 items
  
  datasets: [ ... ] // 6 items
  
  }
  
  ] ,
  
  omero: { ... } // 3 items
  
  }
} ,
"zarr_format": 3 ,
"node_type": "group"

}

RO-Crate metadata

License: ✓ https://creativecommons.org/licenses/by/4.0/
Name: ✓ Exp1_rep1_0min_im1.tif
Description: ✓ Image from idr0047: Multiplex RNA single molecule FISH of inducible mRNAs in single yeast cells.
Organism: × Not found
Imaging method: × Not found

ro-crate-metadata.json

{
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    {
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      "BioChemEntity": "https://schema.org/BioChemEntity",
      "channel": "https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel",
      "obo": "http://purl.obolibrary.org/obo/",
      "FBcv": "http://ontobee.org/ontology/FBcv/",
      "acquisiton_method": {
        "@reverse": "https://schema.org/result",
        "@type": "@id"
      },
      "biological_entity": "https://schema.org/about",
      "biosample": "http://purl.obolibrary.org/obo/OBI_0002648",
      "preparation_method": "https://www.wikidata.org/wiki/Property:P1537",
      "specimen": "http://purl.obolibrary.org/obo/HSO_0000308"
    }
  ],
  "@graph": [
    {
      "@id": "./",
      "@type": "Dataset",
      "name": "Exp1_rep1_0min_im1.tif",
      "description": "Image from idr0047: Multiplex RNA single molecule FISH of inducible mRNAs in single yeast cells.",
      "license": "https://creativecommons.org/licenses/by/4.0/"
    },
    {
      "@id": "ro-crate-metadata.json",
      "@type": "CreativeWork",
      "conformsTo": {
        "@id": "https://w3id.org/ro/crate/1.1"
      },
      "about": {
        "@id": "./"
      }
    }
  ]
}

Multiscale 0

6 Datasets checked ✓

Path 0/zarr.json

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Bytes	838.86 MB	8.39 MB	33.55 MB
Shape	[4,25,2048,2048]	[1,1,2048,2048]	[4,1,2048,2048]
Counts	4,25,1,1	100 Chunks	25 Shards
Type	uint16	numpy.ndarray

Load chunk:

2048

0/zarr.json

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  "zarr_format": 3
}

Path 1/zarr.json

	Array	Chunk	Shard
Bytes	209.72 MB	2.10 MB	8.39 MB
Shape	[4,25,1024,1024]	[1,1,1024,1024]	[4,1,1024,1024]
Counts	4,25,1,1	100 Chunks	25 Shards
Type	uint16	numpy.ndarray

Load chunk:

1024

1/zarr.json

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  "data_type": "uint16",
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  "fill_value": 0,
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  "shape": [
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    1024
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  "zarr_format": 3
}

Path 2/zarr.json

	Array	Chunk	Shard
Bytes	52.43 MB	524.29 KB	2.10 MB
Shape	[4,25,512,512]	[1,1,512,512]	[4,1,512,512]
Counts	4,25,1,1	100 Chunks	25 Shards
Type	uint16	numpy.ndarray

Load chunk:

512

2/zarr.json

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}

Path 3/zarr.json

	Array	Chunk	Shard
Bytes	13.11 MB	131.07 KB	524.29 KB
Shape	[4,25,256,256]	[1,1,256,256]	[4,1,256,256]
Counts	4,25,1,1	100 Chunks	25 Shards
Type	uint16	numpy.ndarray

Load chunk:

256

3/zarr.json

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  "shape": [
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  "zarr_format": 3
}

Path 4/zarr.json

	Array	Chunk	Shard
Bytes	3.28 MB	32.77 KB	131.07 KB
Shape	[4,25,128,128]	[1,1,128,128]	[4,1,128,128]
Counts	4,25,1,1	100 Chunks	25 Shards
Type	uint16	numpy.ndarray

Load chunk:

128

4/zarr.json

{
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      "chunk_shape": [
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  "shape": [
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}

Path 5/zarr.json

	Array	Chunk	Shard
Bytes	819.20 KB	8.19 KB	32.77 KB
Shape	[4,25,64,64]	[1,1,64,64]	[4,1,64,64]
Counts	4,25,1,1	100 Chunks	25 Shards
Type	uint16	numpy.ndarray

Load chunk:

5/zarr.json

{
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  "shape": [
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  "zarr_format": 3
}

: 4496763.zarr

RO-Crate metadata

Multiscale 0