: 6001240.zarr

Validating: /6001240.zarr/zarr.json

Using version 0.5. Using schema: /spec-rfc2/latest/schemas/image.schema
✓
Open with:
  • Viewer logo
{
  • attributes: {
    • ome: {
      • "version": "0.5" ,
      • _creator: {
        • "name": "omero-zarr"
        } ,
      • multiscales: [
        • {
          • axes: [ ... ] , // 4 items
          • datasets: [ ... ] // 3 items
          }
        ] ,
      • omero: { ... } // 3 items
      }
    } ,
  • "zarr_format": 3 ,
  • "node_type": "group"
}

RO-Crate metadata

  • License: ❌ Not found
  • Name: ✓ dataset name
  • Description: ✓ dataset description
  • Organism: × Not found
  • Imaging method: × Not found
ro-crate-metadata.json 
{
  "@context": [
    "https://w3id.org/ro/crate/1.1/context",
    {
      "organism_classification": "https://schema.org/taxonomicRange",
      "BioChemEntity": "https://schema.org/BioChemEntity",
      "channel": "https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome_xsd.html#Channel",
      "obo": "http://purl.obolibrary.org/obo/",
      "FBcv": "http://ontobee.org/ontology/FBcv/",
      "acquisiton_method": {
        "@reverse": "https://schema.org/result",
        "@type": "@id"
      },
      "biological_entity": "https://schema.org/about",
      "biosample": "http://purl.obolibrary.org/obo/OBI_0002648",
      "preparation_method": "https://www.wikidata.org/wiki/Property:P1537",
      "specimen": "http://purl.obolibrary.org/obo/HSO_0000308"
    }
  ],
  "@graph": [
    {
      "@id": "./",
      "@type": "Dataset",
      "name": "dataset name",
      "description": "dataset description",
      "licence": "https://creativecommons.org/licenses/by/4.0/"
    },
    {
      "@id": "ro-crate-metadata.json",
      "@type": "CreativeWork",
      "conformsTo": {
        "@id": "https://w3id.org/ro/crate/1.1"
      },
      "about": {
        "@id": "./"
      }
    }
  ]
}

Multiscale 0

3 Datasets checked ✓

Path 0/zarr.json

Array Chunk Shard
Bytes 70.35 MB 149.05 KB 70.35 MB
Shape [2,236,275,271] [1,1,275,271] [2,236,275,271]
Counts 2,236,1,1 472 Chunks 1 Shards
Type uint16 numpy.ndarray
Load chunk:
271
275
236
0/zarr.json 
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        2,
        236,
        275,
        271
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          275,
          271
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    2,
    236,
    275,
    271
  ],
  "zarr_format": 3
}

Path 1/zarr.json

Array Chunk Shard
Bytes 17.46 MB 36.99 KB 17.46 MB
Shape [2,236,137,135] [1,1,137,135] [2,236,137,135]
Counts 2,236,1,1 472 Chunks 1 Shards
Type uint16 numpy.ndarray
Load chunk:
135
137
236
1/zarr.json 
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        2,
        236,
        137,
        135
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          137,
          135
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    2,
    236,
    137,
    135
  ],
  "zarr_format": 3
}

Path 2/zarr.json

Array Chunk Shard
Bytes 4.30 MB 9.11 KB 4.30 MB
Shape [2,236,68,67] [1,1,68,67] [2,236,68,67]
Counts 2,236,1,1 472 Chunks 1 Shards
Type uint16 numpy.ndarray
Load chunk:
67
68
236
2/zarr.json 
{
  "chunk_grid": {
    "configuration": {
      "chunk_shape": [
        2,
        236,
        68,
        67
      ]
    },
    "name": "regular"
  },
  "chunk_key_encoding": {
    "name": "default"
  },
  "codecs": [
    {
      "configuration": {
        "chunk_shape": [
          1,
          1,
          68,
          67
        ],
        "codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "configuration": {
              "blocksize": 0,
              "clevel": 5,
              "cname": "zstd",
              "shuffle": "shuffle",
              "typesize": 2
            },
            "name": "blosc"
          }
        ],
        "index_codecs": [
          {
            "configuration": {
              "endian": "little"
            },
            "name": "bytes"
          },
          {
            "name": "crc32c"
          }
        ]
      },
      "name": "sharding_indexed"
    }
  ],
  "data_type": "uint16",
  "dimension_names": [
    "c",
    "z",
    "y",
    "x"
  ],
  "fill_value": 0,
  "node_type": "array",
  "shape": [
    2,
    236,
    68,
    67
  ],
  "zarr_format": 3
}